Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs2815346 chr1:67531646 G/A 1.56E-5 391 7.03 14.07 14.75 KM Plot
STAD rs28365926 chr10:70091651 G/C 2.07E-6 398 14.23 15.7 2.53 KM Plot
STAD rs28496344 chr3:118483998 T/G 1.15E-5 404 14.07 17.92 2.7 KM Plot
STAD rs28665607 chr1:228112716 G/A 4.24E-7 394 14.63 13.95 2.23 KM Plot
STAD rs291348 chr1:235667690 A/G 4.54E-5 392 13.53 15.38 15.6 KM Plot
STAD rs291379 chr1:235640283 A/G 3.34E-5 398 13.27 14.67 15.88 KM Plot
STAD rs291380 chr1:235641636 A/G 3.34E-5 398 13.27 14.67 15.88 KM Plot
STAD rs291387 chr1:235647631 G/T 3.69E-5 399 13.27 14.67 16.17 KM Plot
STAD rs291397 chr1:235653025 C/T 4.24E-5 392 13.2 14.27 14.73 KM Plot
STAD rs291399 chr1:235653590 G/A 2.42E-5 392 13.08 14.07 15.6 KM Plot
STAD rs316566 chr5:2308239 G/T 2.01E-5 403 14.27 14.98 8.87 KM Plot
STAD rs316567 chr5:2308195 A/G 2.01E-5 403 14.27 14.98 8.87 KM Plot
STAD rs34057088 chr8:17882706 T/TA 4.19E-5 402 12.6 16.37 14.23 KM Plot
STAD rs34257012 chr1:182737443 G/T 4.06E-5 399 14.22 15.6 4.75 KM Plot
STAD rs34260638 chr7:148982295 TG/T 4.52E-5 405 14.22 16.38 3.43 KM Plot